FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1447850
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATACACGGCCGTGTCCGCGGCGGTCACAGAGCTCAGCTTCAGGGAGA20700.14297061159650515No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGG20680.14283247573989016No Hit
GTCTCTGGTGGCTCCATCAATAGTTACTACTGGAGCTGGATCCGGCAGCC17570.12135235003626066No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT17110.1181752253341161No Hit
CTCCTGTACTGGGAACAGCAACAACGTTGGAAGTTATGCTGTGGGCTGGT16780.11589598369996891No Hit
TCCTAAGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC16110.11126843250336706No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT15620.10788410401630004No Hit
TGCACACACAGAGCGGCCAGCCGCCCCGAGCCTGTGGGCAGGCCAGCAGG14890.10284214524985322No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)