FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1040129
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC19100.18363106883857674No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATATCAAAGTGGTAGAA13980.13440640535933523No Hit
GTAATACATGGCGGTGTCCGAGGCCTTCAGGCTACTCCATTGCAAGTAGG13250.127388045136709No Hit
GTAATATTCAGCCTCGTCCTCAGCCTGGAGCCCAGAGATTGTCAGGGAGG12190.11719700152577228No Hit
CTCCTGGACAGTCGATCAGCATCTCCTGCTCTGGAACCAGTAGTGATATT11680.11229376356201971No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAATATCAA11370.10931336401542502No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC10950.10527540333939349No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT10780.10364099068480928No Hit
GTGTACACCTGTGGTTCTCGGGGCTGTCCTTTGGTTTTGGAGATGGTTTT10660.10248728763451456No Hit
GTCCTGGGCCCAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTC10450.10046830729649879No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)