FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences830525
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTATTACTGTGCAGCATGGGATGACGGCCTGAGTGGTCCGGGGTTCGG21270.2561030673369254No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC16550.19927154510701062No Hit
GTCCTGGGCCCAGTCTGTGTTGACTCAGCCACCCTCAGCGTCTGGGACCC16300.19626140092110414No Hit
GTGCAGGGTCCTGGGCCCAGTCTGTGTTGACTCAGCCACCCTCAGCGTCT15860.19096354715390867No Hit
GTAATAATCAGCCTCATCCTCGGACCGGAGCCCACTGATGACCAGGGAGG13660.16447427831793143No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT13090.1576111495740646No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT12120.14593179013274735No Hit
GCCTTGGGCTGACCCAGGACGGTCAACTTGGTCCCTCCGCCGAACCCCGG12010.1446073266909485No Hit
TCCTGGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC11710.1409951536678607No Hit
GTGTTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGACGGTCTC10780.1297974172962885No Hit
GTATACTGGTACCAGCAGGTCCCTGGAACGGCCCCCAAACTCCTCATCTT10620.12787092501730832No Hit
CCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGTTGACTCAGCCAC10360.12474037506396557No Hit
GTAGTACGTGGCCGTGTCTGCAGCGGTCACGGAGTTCAACTTCAGGGAGA10040.12088739050600524No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGA9530.11474669636675595No Hit
GTTCCCGCCCTCCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGT9420.1134222329249571No Hit
GTTTAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGC9160.11029168297161435No Hit
GGTACCAGCAGGTCCCTGGAACGGCCCCCAAACTCCTCATCTTTAGGAGT9040.10884681376237922No Hit
GTCCTGGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTC8930.10752235032058036No Hit
GTCTCTGGTGGCTCCGTCAGTAGTGGTAGTTACTATTGGAGCTGGATGCG8870.1067999157159628No Hit
TCTCTACACAGTGAAACTTTTTTTAAAAAGAATAGTAAAGAAAATGCGGA8530.10270611962312995No Hit
GTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCTGCCTTCCAG8340.10041841004184102No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)