FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1193595
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTATACTGCTGACAGTAATAAACTGCAAAATCTTCAGACTGCAGGCT32340.2709461752101844No Hit
GTATAATAATTGGCCGCCCCTTTTCGGCCCTGGGACCAAAGTGGATATCA31120.2607249527687365No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT30140.2525144626108521No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC23670.1983084714664522No Hit
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTC18670.15641821555887886No Hit
GTCTCCAGCCACCCTGTCTGTGTCTCCAGGGGAAAGAGTCACCCTCTCCT17260.14460516339294316No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT16920.14175662599122818No Hit
TCTCTACACAGTGAAACTTTTTTTAAAAAGAATAGTAAAGAAAATGCGGA14510.12156552264377785No Hit
CTCCTGCAGGGCCAGTCAGAGTGTTAGCAACAACTTAGCCTGGTACCAAC14170.11871698524206285No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT13270.11117673917869964No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG12540.10506076181619395No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG12430.10413917618622731No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)