FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005280903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005280903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences716785
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTATTGTCAGTACTATGGTGACTCGCCTCACACTTTTGGCCAGGGGA19930.2780471131510843No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT16940.23633307058601952No Hit
ACATAGACCTGGCCAGCCTCCCAGGCTCCTCATCTATGGTGCATCCAAGA13580.18945708964333796No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC13330.18596929344224558No Hit
GTACTATGGTGACTCGCCTCACACTTTTGGCCAGGGGACCAGGCTCGAGG13000.18136540245680366No Hit
CAATAATACACTGCAAAATCTTCAGGCTCCAGGCTGTTGATGGTGACGGT12870.1795517484322356No Hit
GTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCACCGTCTCCT11510.16057813709829308No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTC11100.15485815132850156No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10170.1418835494604379No Hit
CCATAGTACTGACAATAATACACTGCAAAATCTTCAGGCTCCAGGCTGTT10160.14174403761239424No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC9390.13100162531302972No Hit
TCCTTAGCCTGGTATCAACATAGACCTGGCCAGCCTCCCAGGCTCCTCAT9380.130862113464986No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT9300.12974601868063645No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT7260.10128560167972266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)