FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1740996
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT41160.23641639613186932No Hit
GTCTATTACTGTGTGAGGTCGGGATATAGCAACTCGTCCGTCGACATCTA36300.2085013406119256No Hit
GTAATAGACAGCCGTGTCCTCGGCTCTCAGGCTGTTCATGTGCAGATACA36180.20781207998180354No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT29550.16973043016755926No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC29480.1693283614666547No Hit
GTACGTGCTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCA25020.14371084138045118No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGCGCGACCCCGAGAGCCC22600.1298107520063228No Hit
TATAAAAGGTGTCCAGTGTCAGGTGCAGCTGGTGGAGTCTGGGGGAGGCT22450.12894917621867022No Hit
GATATATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACG22150.12722602464336508No Hit
GTATCATAATCTCCCGCTCACTTTCGGCGGAGGGACCAAGGTGGAGATCA21610.12412435180781575No Hit
ATATTACTGTCAACAGTATCATAATCTCCCGCTCACTTTCGGCGGAGGGA21400.12291814570510214No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT21390.12286070731925863No Hit
GTAGGAGACAGAGTCACCATCACTTGCCAGGCGAGTCAGGACATTACCAA20640.1185528283809957No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC20130.11562347070297693No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCC19880.11418751105688926No Hit
CTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGTCAGGGCGCCTGAGT19620.11269411302495813No Hit
TTATGATACTGTTGACAGTAATATGTTGCAATGTCTTCAGGCTGCAGACT18470.10608869865295498No Hit
CTGTTGTACTGCTCCTCCCGCGGCTTTGTCTTGGCATTATGCACCTCCAC18460.10603126026711147No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG18440.10591638349542445No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGCTTTGGAGATGGTTTT17530.10068949038366543No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)