FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1062643
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATAGACAGCCGTGTCCTCGGCTCTCAGGCTGTTTAATTCCAGAAACA46820.4405995240170029No Hit
GTCTATTACTGTGCGACAGGGGGCTATGGGTCGGGGAGCTCGGCCTACTG25490.2398735981886673No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT19440.18294008429924255No Hit
TCCCAATACTACGCAGACTCAGTGAAGGGCCGCTTCATCATCTCCAGAGA14840.13965179274695264No Hit
GTATTGGGAACTAGTAGGACTAGTAATAGATGAGACCCACTCCAGCCCCT14520.13664043333461942No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC13480.1268535152445365No Hit
GTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAAAGCCACCCTCTCCT12470.1173489120993598No Hit
TCTCTACACAGTGAAACTTTTTTTAAAAAGAATAGTAAAGAAAATGCGGA12340.11612554733809943No Hit
GTATAAGCACTGACACTGAATCCAGAGGCTGCACAGGAGAGTCTCAGGGA12220.11499628755847449No Hit
CTATTACTGTCAGCAGTATGGTAGCTCATCCCCGTACAGTTTTGGCCAGG10750.10116285525806878No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT10660.10031591042335007No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)