FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences898264
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATACTACTGTGCGAGAGGACTGTGGACGGACTGGGGCCAGGGAACCCT35150.39131034974127876No Hit
GTAGTATATAGCCGTGTCCTCGTCTCTCAGGCTGTGCATTTGCAGATATA33980.37828522572428597No Hit
GTATATAGCCGTGTCCTCGTCTCTCAGGCTGTGCATTTGCAGATATAGTG17570.1955995119474898No Hit
GTCCCAGGCTGTGCAGTAATAGTCAGCTTCGTCCTCAGGTTGGAGCCCAG17150.19092382640292832No Hit
GCTATATACTACTGTGCGAGAGGACTGTGGACGGACTGGGGCCAGGGAAC16730.1862481408583668No Hit
GCCTGGGACAGCGACCTCAGTGCTTGGCTGTTTGGCGGAGGGACCAGGCT15760.1754495337673557No Hit
TCCAGAGACAATGCCAAGAACTCACTATATCTGCAAATGCACAGCCTGAG13490.15017856665746374No Hit
CATTAGCACTTCTGGTACCCCCACATATTATGCAGATTCTGTGAAGGGCC11040.12290373431418826No Hit
GTCTCTGGATATGCTGAATCGGCCCTTCACAGAATCTGCATAATATGTGG10810.12034323984930932No Hit
TCTCTACACAGTGAAACTTTTTTTAAAAAGAATAGTAAAGAAAATGCGGA10740.11956395892521576No Hit
GTGTACAGGTCCCCGGAGGCATCCTGGCTGGGTGGGAAGTTTCTGGCGGT10490.11678081276773866No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)