FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences679292
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAATGACAGGCTCCCAATCACCTTCGGCCAAGGGACACGACTGGAGA18300.26939813806139334No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT18060.26586504772616193No Hit
TCATTATACTGCTGACAGTAATAAACTGCAAAATCTTCAGACTGTAGGCT13000.19137572649170018No Hit
GTAATACACGGCCGTGTCCTCGTCTCTCAGGCTGTTCATTTGCAGATACA11770.1732686385236393No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC10770.15854742879350853No Hit
GTTAGGACCCAGACGGAACCATGGAAGCCCCAGCGCAGCTTCTCTTCCTC10180.1498619150527314No Hit
GTCTGGGACAGAGTTCACTCTCACCATCAGCAGCCTACAGTCTGAAGATT9770.14382621906337775No Hit
GTCTCCAGCCACCCTGTCTGTGTCTTCAGGGGAAAGAGCCACCCTCTCCT9720.1430901585768712No Hit
GTCCCAGACCCACTGCCACTGAACCTGGCTGGGATGCCAGTGGCCCTGGT9490.1397042803389411No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT9420.13867379565783197No Hit
GTGTATTACTGTGCGAGAGTCACAATTATTCCTGGGTTCTGGTTCGACTC9020.13278531176577965No Hit
GTCATTATACTGCTGACAGTAATAAACTGCAAAATCTTCAGACTGTAGGC8390.12351094963579728No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC8320.12248046495468813No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGTTTTGGAGATGGTTTT7860.11570870847882794No Hit
CATCTATGGTGCATCCACCAGGGCCACTGGCATCCCAGCCAGGTTCAGTG7620.11217561814359657No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT7560.11129234555978872No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCA7450.10967301248947434No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG7440.10952580039217304No Hit
ATGTAGAGTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAG7420.1092313761975704No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC6980.10275404391631286No Hit
CTCCTGCAGGGCCAGTCAGAGTGTTAGCAACAACTTAGCCTGGTACCAGC6960.10245961972171025No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)