FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences973306
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTACTGTCAGCACTATGGTGCCTCACCTCGAACGTTCGGCCAAGGGA27930.28696011326345466No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT27880.28644640020712914No Hit
GTGTATTACTGTCAGCACTATGGTGCCTCACCTCGAACGTTCGGCCAAGG23490.2413423938617454No Hit
GTAATACACTGCACAATCTTCAGGCTCAAGTCTGCTGATGGTGAGAGTGA20930.21504028537787703No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC18500.19007383084045512No Hit
CAGTAATACACTGCACAATCTTCAGGCTCAAGTCTGCTGATGGTGAGAGT18490.18997108822918998No Hit
GTCTCCAGGCACCCTGTCTTTGTCTCCAGGGGAAAGAGCCTCCCTCTCCT16640.17096370514514447No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT15370.1579153935144754No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15050.15462762995399185No Hit
TCTCTGATGCATCCACAAGGGCCCCTGGCATCCCAGACAGGTTCAGTGGC14860.15267552033995474No Hit
GTTAGGACCCAGAGGGAACCATGGAAACCCCAGCGCAGCTTCTCTTCCTC14290.14681919149784345No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG12330.1266816396898817No Hit
CTCCTGCAGGGCCCGCCAGACTGTTGGCAACAACTACTTAGCCTGGTACC11840.12164725173789126No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG11180.11486623939439394No Hit
GTCTGGGACAGACTTCACTCTCACCATCAGCAGACTTGAGCCTGAAGATT11110.11414704111553818No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC11050.11353058544794752No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC10860.11157847583391041No Hit
GTCCCAGACCCACTGCCACTGAACCTGTCTGGGATGCCAGGGGCCCTTGT10690.10983185144240351No Hit
ATAATAGACAGCCGTGTCCTCCTCTCTCAGGCTGTTCATTTGCAGATACA10590.1088044253297524No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT10290.10572214699179909No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG10230.10510569132420843No Hit
GCACTATGGTGCCTCACCTCGAACGTTCGGCCAAGGGACCAAGGTGGAAA10160.10438649304535265No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)