FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1091554
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAATAATCAGCCTCATCCTCAGACTGGAGCCCACTGATGGCCAGGGAGG23820.2182209950217763No Hit
GATTATTACTGTGCAGCATGGGATGACAGCCTGAATGGTTATGTCTTCGG22290.20420428123574277No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14510.13292974969630453No Hit
CACTAGTGTGGCCTTGTTGGCTTGGAGCTCCTCAGAGGAGGGCGGGAACA14060.1288071868180594No Hit
TCCTAGGTCAGCCCAAGGCCAACCCCACTGTCACTCTGTTCCCGCCCTCC13950.12779944922559947No Hit
GTTTGGAGGGTTTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCCATCT13520.12386011136416522No Hit
GTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCACCCTCAGCGTCT13380.12257753624648896No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACAGTGGGGTTGGCCTTGGGCTGA12630.11570659811608038No Hit
GTCCTGGGCCCAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCC12470.11424079798159321No Hit
CCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGCTCCCTTCA11950.10947694754450993No Hit
GACCTAGGACGGTGACCCTGGTCCCAGTTCCGAAGACATAACCATTCAGG11420.10462148459902121No Hit
CATCTATAGTATTCATCAGCGGCCCTCAGGGGTCCCTGACCGATTCTCTG11380.10425503456539943No Hit
CCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCAC11080.10150665931323599No Hit
ACCTAGGACGGTGACCCTGGTCCCAGTTCCGAAGACATAACCATTCAGGC10980.10059053422918152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)