FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences992602
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT29200.29417631638864317No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC23610.23785968595670776No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT16980.17106554288627265No Hit
TTACTACTGCATGCAAGGTCTAAAAATTCCGTACACTTTTGGCCAGGGGA16980.17106554288627265No Hit
GTCTAAAAATTCCGTACACTTTTGGCCAGGGGACCAAGCTGGAGATCAAA16290.1641141162318835No Hit
CCCCTGGAGAGTCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCTTG15940.16058803024777302No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG14450.1455769784868457No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC13870.13973375028460552No Hit
ATAATAGACAGCCGTGTCCTCGGCCCTCAGACTATTCATTTGCAGATACA13860.13963300497077377No Hit
GGCGTAGACTTTGTGTTTCTCGTAGTCTGCTTTGCTCAGCGTCAGGGTGC13000.13096890798124525No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG12680.12774505793862997No Hit
GTCCTGCTCTGTGACACTCTCCTGGGAGTTACCCGATTGGAGGGCGTTAT11490.11575636559265445No Hit
CTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAACTGTGGCTGCACCA11110.11192804366704882No Hit
GGCTGGAACTGAGGAGCAGGTGGGGGCACTTCTCCCTCTAACACTCTCCC10890.10971164676275083No Hit
GTCTTCATCTTCCCGCCATCTGATGAGCAGTTGAAATCTGGAACTGCCTC10650.10729375923078939No Hit
CCTCCAACATTAGCATAATTAAAGCCAAGGAGGAGGAGGGGGGTGAGGTG10650.10729375923078939No Hit
GTAGTAAATCCCAACATCCTCAGCCTCCACTCTGCTGATTTTCAGTGTAA10160.10235723885303476No Hit
GTCTATTATTGTGGGAGAGATCTTAGTGGGCAATACGACTCCTGGGGCCA10010.10084605914555883No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)