FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005281445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48010078
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC1445260.3010326290242644No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTG950600.19800009489674228No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA914770.19053707848589624No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAACCTTTCCTTATGAGCATGCCTGT850980.17725028482561517No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT848520.17673789240667345No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGC735790.15325740566386917No Hit
GGTGAAGTCTTAGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTC708510.1475752653432473No Hit
CGTTGGGTTGACAGTGAGGGTAATAATGACTTGTTGGTTGATTGTAGATA651440.1356881778030021No Hit
AGGGTGATAGATTGGTCCAATTGGGTGTGAGGAGTTCAGTTATATGTTTG644030.13414475185814112No Hit
GCACTCTACTCTCAGTTTACTGCTAAATCCACCTTCGACCCTTAAGTTTC628140.1308350300951396No Hit
CAGTCCTTTGAAGTATACTTGAGGAGGGTGACGGGCGGTGTGTACGCGCT554420.1154799206949841No Hit
ATGAGGGTAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTTAAT550450.1146530109782367No Hit
CATGCCTGTGTTGGGTTGACAGTGAGGGTAATAATGACTTGTTGGTTGAT538660.11219727658013803No Hit
TGCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTG536290.11170363022530395No Hit
GCCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATA534140.11125580758273294No Hit
AGTTGGTTGATTGTAGATATTGGGCTGTTAATTGTCAGTTCAGTGTTTTA529670.11032475306538764No Hit
CTGCTGTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGG504970.105179999915851No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT503700.1049154721223323No Hit
AGTGAGGGTAATAATGACTTGTTGGTTGATTGTAGATATTGGGCTGTTAA501070.10436767047118732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)