FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281457

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281457
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences713061
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGATGGAAACACCTTCTTCTTGGATTGGTTTCAGCAGAGGCCAGGCCAA23610.331107717292069No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT16660.2336406001730567No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC13980.19605615788831532No Hit
CCCTTAGACTCTCCTGTGAAGCCTCTGGATTCACCTTTCGTAATAATTGG13300.1865198068608436No Hit
GTATGTACACGGGGTACGTGCCAAGCATCCTCGTGCGACCGCGAGAGCCC12650.17740417720223095No Hit
GGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAAGAACCAGGTCA11490.16113628427301452No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11490.16113628427301452No Hit
TTCCATCACTGTGCACGAGGCTTTGACTAGACCTGCAGGAGATGGAGGCC11150.15636810875927867No Hit
GTGTACACCTGTGGTTCTCGGGGCTGCCCTTTGGTTTTGGAGATGGTTTT11010.15440474237126978No Hit
TTATTACTGCATGCAAGGTCTACTCTGGCCTTGGACGTTCGGCCAAGGGA10380.14556959362522984No Hit
CTCTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGAT10050.1409416585677803No Hit
GAGTAGACCTTGCATGCAGTAATAAACGCCAACATCCTCAGCCTCCACCC10030.1406611776552076No Hit
GTGGTGGACGTGAGCCACGAAGACCCCGAGGTCCAGTTCAACTGGTACGT9740.13659420442290351No Hit
CTGTAGGACAGCTGGGAAGGTGTGCACGCCGCTGGTCAGAGCGCCTGAGT9660.13547228077261272No Hit
CTCCAGAGACAACGCCAAGAACTCAGTGTATCTGCAAATGAACAGCCTGA9060.12705785339543182No Hit
GTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTGGTGACCGTGCC8740.12257015879426865No Hit
GTTCTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACG8700.12200919696912327No Hit
CTCCTGTGAAGCCTCTGGATTCACCTTTCGTAATAATTGGATGGCCTGGG8690.1218689565128369No Hit
ATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCG8690.1218689565128369No Hit
CAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGG8600.12060679240625978No Hit
CCTTCCCAGCTGTCCTACAGTCCTCAGGACTCTACTCCCTCAGCAGCGTG8380.1175215023679601No Hit
CTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAGCC8130.1140154909608014No Hit
CAACAGAGGCAGTTCCAGATTTCAACTGCTCATCAGATGGCGGGAAGATG7920.11107044137878806No Hit
CCCTTGGACAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCCTCGTG7920.11107044137878806No Hit
GATCAGCACTGAGCACAGAGGACTCACCATGGGATTGGGGCTGAGCTGGG7590.10644250632133856No Hit
CTATGTGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCA7440.10433889947704335No Hit
GTTGGAGACCTTGCACTTGTACTCCTTGCCGTTCAGCCAGTCCTGGTGCA7140.10013168578845287No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)