FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281462

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281462
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1295754
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTAGGTCAGCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCC32400.25004746271282974No Hit
GTAATACACAGCCGTGTCTTCGGGAGTCACAGAGTGCAGCTGCAGGGAGA31090.23993751900437893No Hit
GACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCGGATGATCACTA24340.18784429760587273No Hit
GCCTTGGGCTGACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCGG21810.16831898647428448No Hit
GCCCAAGGCTGCCCCCTCGGTCACTCTGTTCCCGCCCTCCTCTGAGGAGC18300.14123051134706124No Hit
GGCCTGGACCGTTCTCCTCCTCGGCCTCCTCTCTCACTGCACAGGCTCTG17900.13814350563455718No Hit
CCCATGGGGTGTCCTGTCACAGGTACAGCTGCAGCAGTCAGGTCCAGGAC17100.13196949420954904No Hit
CCTCAGAGGAGGGCGGGAACAGAGTGACCGAGGGGGCAGCCTTGGGCTGA16530.12757051106923073No Hit
GTGTATTACTGTGCAAGGGGAGTCTATGATGGAACTACCTACCAGTTTGA16110.12432915507110147No Hit
GTTTGGAGGGTGTGGTGGTCTCCACTCCCGCCTTGACGGGGCTGCTATCT16020.12363457878578805No Hit
CCTCTGAGGAGCTTCAAGCCAACAAGGCCACACTGGTGTGTCTCATAAGT15840.1222454262151612No Hit
GTTTAGAACCTATGAACATTCTGTAGGGGCCACTGTCTTCTCCACGGTGC14370.11090068022170875No Hit
ACCTAGGACGGTCAGCTTGGTCCCTCCGCCGAACACCGGATGATCACTAC13520.10434079308263759No Hit
GCCCTCAGGGATCCCTGAGCGATTCTCTGGCTCCAACTCTGGGAACACGG13000.10032768565638231No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)