FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14773546
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC478112732.36275840614027No Hit
GATGCCAA379213825.668434646631216No Hit
AGGTATTG328387722.228089315862285No Hit
CTCCTAGT270769118.32796946650452No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)