FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005281551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18935063
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCTC613528932.40173534146678No Hit
TTCGCTGA442632623.376346833385238No Hit
ACAAGAAT404613121.368458082236113No Hit
CATTAGCG400910021.172889680905733No Hit
GGGCTCTA267870.14146770993051358No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)