FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005281566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19503900
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCTC633768532.494449827983125No Hit
TTCGCTGA456500323.40559067673645No Hit
ACAAGAAT417681721.415291300714216No Hit
CATTAGCG413387321.195109696009514No Hit
GGGCTCTA269650.1382544004019709No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)