FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16837019
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTTGG472026728.035051810537244No Hit
CTGCGGCT468052927.799036159548194No Hit
AGAAACTC424640525.220646243851125No Hit
GACTCAAA289321217.183635654268727No Hit
TCTGTTGA284130.1687531504240745No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)