FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21659294
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCGGGC648020229.91880529439233No Hit
CACGCCTT595716427.503962040498642No Hit
AGGATACA483796322.33666065015785No Hit
GTATATAG401416718.533231046219697No Hit
CACGCCTA486090.22442559762104897No Hit
CCCGCCTT218700.10097282025905369No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)