FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005281639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41901481
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT1393099333.24701816625527No Hit
CCAGGGCA1245990129.736182833251167No Hit
AATAATGG971173623.177548306705436No Hit
GTGTCATC532204912.701338647194833No Hit
AATAATGA470730.11234209120197923No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)