FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65805885
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCTCAT2190119933.2815203381886No Hit
CCAGGGCA1953753929.689653136645756No Hit
AATAATGG1527942423.21893247085728No Hit
GTGTCATC834814812.686020406837473No Hit
AATAATGA733390.11144747920341774No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)