FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005281659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40839360
Sequences flagged as poor quality0
Sequence length26
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATGGA156600.017.4845588
GGGAATG112900.017.081021
TGCGGGT106200.017.0472681
ACTGATG120800.016.7754141
GAATGAA129750.016.7437671
AGATATG83450.016.669168
TTTATGC98750.016.6620921
CTCGAAA106200.016.5669291
CTGCCTA146850.016.5172791
GGGAGAT79900.016.474411
GTGATAA77800.016.3886648
ATGCGAT74050.016.34411
GGTATTG87700.016.2637481
CGACCTT132700.016.2584821
GGGACCT90900.016.1973761
GTAACTG111600.016.195511
GGCGACT91350.016.1942311
GGAACTT113550.016.1728381
CCGGGAT83800.016.1612641
GACTAAC111850.016.1503721
Produced by FastQC (version 0.11.5)