FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17819596
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCCGTT496478927.861400449258223No Hit
TTGTTTCC482481127.07587197824238No Hit
CCTAACAA398871522.38386885987763No Hit
GGAGGAGG374371921.009000428517012No Hit
AACCCGTA315000.17677168438611066No Hit
TTGTTTCA256680.14404366967691073No Hit
ACCCCGTT217580.12210153361501574No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)