FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38605350
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATTCCA1055713227.34629267705124Illumina Small RNA Adapter 2 (100% over 8bp)
CGCGATAC1036645426.85237667836194No Hit
TTTACATG923917923.932379838545696No Hit
ACGCGGGT794932820.59126001966049No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)