FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005281788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25809453
Sequences flagged as poor quality0
Sequence length26
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGAT64050.017.3663351
GGTATTG81700.017.3488331
TGATTTC87100.017.2608951
ACTGATG78500.017.2023031
GGGAATG69750.017.0370621
TACTTGT81050.017.0189881
CGGACTG65050.016.9763491
TTTATGC68300.016.8715211
GGGAGAT61050.016.8106371
ACTGAAC78150.016.7673651
TGCGGGT64550.016.6584531
GACTAAC63500.016.5085931
GTACTTT90550.016.4817311
TCTATTG80850.016.47961
TGACTAG66850.016.4743541
GAATGAA70450.016.4560261
CTCGAAA63800.016.4152871
GACCTGG88300.016.4032671
GGCGACT58300.016.4025671
CTAGCCT118100.016.3805711
Produced by FastQC (version 0.11.5)