FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005281808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28295341
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATGGT940624133.24307347983543No Hit
CAAGCTCC907246332.06345171807613No Hit
GTTCACTG682510624.120953339986254No Hit
TCGTGAAA26298949.29444179520579No Hit
CAAGCTCA496280.17539283233943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)