FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005281832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31816088
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCTTA941505729.592126473876988No Hit
GCTTGGCT825577325.94842269734733No Hit
TTCATCGG779495424.500039099715842No Hit
AAACAAAC598688018.81714684721767No Hit
CGGGCTAA411890.12945966204267476No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)