FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005281835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31155593
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCTTA921955829.59198369294399No Hit
GCTTGGCT807510325.918630404499122No Hit
TTCATCGG763505824.50621947718986No Hit
AAACAAAC589007818.905363155822457No Hit
CGGGCTAA410760.1318414963245925No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)