FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005281841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31794358
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCTTA940695529.586868840062756No Hit
GCTTGGCT824772325.940838308482277No Hit
TTCATCGG779082924.50380976398391No Hit
AAACAAAC601108918.90614995276835No Hit
CGGGCTAA411700.12948838281307645No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)