FastQCFastQC Report
Wed 8 May 2024
EGAF00005281876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14770881
Total Bases118.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGAGAGT404742127.401351347966312No Hit
CTATAGTG381437225.82359170045443Clontech Universal Primer Mix Short (100% over 8bp)
AGTCCCAC373871125.311360913407942No Hit
TACGTTCA300646420.353992426044186No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)