FastQCFastQC Report
Wed 8 May 2024
EGAF00005281882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49429918
Total Bases395.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT1329114126.88885909137053No Hit
CTGGACTC1234533624.975432894709638No Hit
AAACCTCA1216928924.619278146486103No Hit
TGTAGAAG1090614422.06385209864196No Hit
CTGGCCTC678350.1372347006523458No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)