FastQCFastQC Report
Fri 10 May 2024
EGAF00005281892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49675939
Total Bases397.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT1335927426.892846454296514No Hit
CTGGACTC1238201824.92558419479499No Hit
AAACCTCA1221748924.59437958485294No Hit
TGTAGAAG1095749122.057944390341568No Hit
CTGGCCTC790590.1591494828109842No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)