FastQCFastQC Report
Wed 8 May 2024
EGAF00005281898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29613330
Total Bases236.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT797534426.93160141058098No Hit
CTGGACTC739913324.985818886292087No Hit
AAACCTCA730024124.651874679409577No Hit
TGTAGAAG654608822.10520735087881No Hit
CTGGCCTC323610.10927849046358515No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)