FastQCFastQC Report
Wed 8 May 2024
EGAF00005281902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30451865
Total Bases243.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT820512326.94456644937839No Hit
CTGGACTC761519025.007302508401374No Hit
AAACCTCA750106024.63251429756437No Hit
TGTAGAAG673421122.11428101365877No Hit
CTGGCCTC370500.12166742496723928No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)