FastQCFastQC Report
Wed 8 May 2024
EGAF00005281905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30292763
Total Bases242.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT815662526.92598558936337No Hit
CTGGACTC756647024.977814007919978No Hit
AAACCTCA746252524.634679246657033No Hit
TGTAGAAG669417522.098264856196842No Hit
CTGGCCTC393410.12986930244692438No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)