FastQCFastQC Report
Thu 9 May 2024
EGAF00005281908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49412048
Total Bases395.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT1331830326.95355391867182No Hit
CTGGACTC1232529924.9439144882236No Hit
AAACCTCA1219149724.673126278837906No Hit
TGTAGAAG1096852722.19808213575766No Hit
CTGGCCTC547760.11085555490434236No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)