FastQCFastQC Report
Wed 8 May 2024
EGAF00005281915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49795102
Total Bases398.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT1341475926.939916701044208No Hit
CTGGACTC1242266724.947568136319916No Hit
AAACCTCA1227629224.6536135220689No Hit
TGTAGAAG1103200622.15480149031525No Hit
CTGGCCTC645630.12965733055431838No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)