FastQCFastQC Report
Wed 8 May 2024
EGAF00005281946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58156966
Total Bases465.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCCTAC1605411627.604803180413505No Hit
CTGTAACT1425326024.508259251350907No Hit
AGAGTGTG1363423423.443853656327256No Hit
TCTAGCGA1315102322.6129798449252No Hit
GCCCCTAC2169950.37311953309256196No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)