FastQCFastQC Report
Fri 10 May 2024
EGAF00005281960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37263338
Total Bases298.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCCTAC1019285127.353563977548117No Hit
CTGTAACT910630424.437703353360344No Hit
AGAGTGTG875607523.49782781134637No Hit
TCTAGCGA844985522.676054947090353No Hit
GCCCCTAC2209990.5930735459072399No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)