FastQCFastQC Report
Wed 8 May 2024
EGAF00005281996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005281996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42721387
Total Bases341.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGC1113414526.062227333583525No Hit
GTTCCTCA1077566325.223111318927916ABI Solid3 Adapter A (100% over 8bp)
TAAGTATG1039283624.3270097948833No Hit
CCCAGGAT977244722.874835501010303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)