FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282028

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282028
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences689519
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGATCGA67960398.56189604637436No Hit
GTGATCAA14290.2072459207070436No Hit
GTGATCGC14240.2065207775275228No Hit
GTGAACGA11610.16837824628472892No Hit
GAGATCGA9420.13661697502171805RNA PCR Primer, Index 21 (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)