FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1376828
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCATCG135428698.36275845639398No Hit
CGCCATCA51260.37230503737576515No Hit
CGCCAACG30050.21825529405270666No Hit
CGCCATCC18740.13610995708977447No Hit
CCCCATCG14010.10175562960660299No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)