FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1218090
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGCGT120147398.63581508755512Illumina PCR Primer Index 6 (100% over 8bp)
ATTGGCGA33560.2755133036146754No Hit
AATGGCGT21480.1763416496318006No Hit
ATAGGCGT13310.1092694300092768No Hit
ATTGGCGG12630.10368691968573751No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)