FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1285128
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGCGT126861298.71483618752373Illumina PCR Primer Index 6 (100% over 8bp)
ATTGGCGA34620.26938950828244346No Hit
AATGGCGT22150.17235637228353906No Hit
ATAGGCGT13070.10170193163638173No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)