FastQCFastQC Report
Wed 8 May 2024
EGAF00005282117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1507675
Total Bases12 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGTGGT148876698.74581723514683No Hit
GATGTGGA38880.2578805113834215No Hit
GAAGTGGT24050.15951713731407632No Hit
GATGAGGT17110.11348599665047177No Hit
GAGGTGGT15300.10148075679440197No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)