FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1491998
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACATCC146625298.27439446969768No Hit
CTACATCA62720.42037589862721No Hit
CAACATCC40990.2747322717590774No Hit
CTACAACC36110.24202445311588888No Hit
CTACCTCC21700.14544255421253915No Hit
CTACATAC17200.11528165587353335No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)