FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1453569
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACATCC142729298.19224267991406No Hit
CTACATCA63740.4385068751466219No Hit
CAACATCC43520.29940099162819245No Hit
CTACAACC37400.25729772718047783No Hit
CTACCTCC22030.1515579927750248No Hit
CTACATAC18880.12988719489752465No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)