FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005282131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1541004
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACATCC151543398.34062727935813No Hit
CTACATCA64400.41790936298672815No Hit
CAACATCC41240.2676177349312526No Hit
CTACAACC37720.24477548403508362No Hit
CTACCTCC20330.13192697747702148No Hit
CTACATAC16580.10759219314161418No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)