FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005282137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005282137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1479498
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA145123998.0899602432717No Hit
TCCTCAAA80550.5444414254023999No Hit
TCCACCAA42180.28509670171909657No Hit
ACCTCCAA37270.2519097693947542No Hit
TCCTCTAA17050.11524179147251298No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)